<?xml version="1.0" encoding="utf-8"?>
<Journal>
<Journal-Info>
<name>International Journal of Pharma and Bio Sciences</name>
<website>ijpbs.net</website>
<email>editorijpbs@rediffmail.com (or) editorofijpbs@yahoo.com (or) prasmol@rediffmail.com</email>
</Journal-Info>
<article>
<article-id pub-id-type='other'>10.22376/ijpbs.2019.10.1.p1-12</article-id>
<issue_number>Volume 6 Issue 3</issue_number>
<issue_period>2015 (July - September)</issue_period>
<title>EVOLUTIONARY EVIDENCE FOR THE PREVALENCE OF TY3 GYPSY SUBCLASS RETROTRANSPOSONS DURING ANNOTATION OF GERANIOL DEHYDROGENASE GENE IN JAVA CITRONELLA (CYMBOPOGON WINTERIANUS JOWITT) </title>
<abstract>When  lessThan i greaterThan GDH lessThan /i greaterThan - specific amplified product was annotated after three times of sequencing, it showed the similarity with Ty3 gypsy class retrotransposon protein of  lessThan i greaterThan O. sativa lessThan /i greaterThan ,  lessThan i greaterThan Z. mays lessThan /i greaterThan  and  lessThan i greaterThan S. bicolor lessThan /i greaterThan . Annotation was confirmed by the phylogenetic analysis performed between the new and LTR-RT sequences of the model plants. It was confirmed that  lessThan i greaterThan C. winterianus lessThan /i greaterThan  have been evolved from  lessThan i greaterThan Z. mays lessThan /i greaterThan  around 22.85 mya and thus, only a small subset of LTR sequence (6%) is showing similarity with  lessThan i greaterThan Z. mays lessThan /i greaterThan  as compared to the 1083 bp  lessThan i greaterThan GDH lessThan /i greaterThan  sequence. A new 1536 bp with gene coordinates  lessThan  1…714, 730…909, 949…1407, 1426…1536 greaterThan  Ty3-gyspy class of RT containing mobile element sequence spanning from 1186-1536 bp with GenBank accession no. KF415292 in NCBI as  lessThan i greaterThan Cymbopogon winterianus lessThan /i greaterThan  RT sequence was released. Thus, there may a prevalence of LTR-RT's across the  lessThan i greaterThan Citronella lessThan /i greaterThan  genome as evidenced by the evolutionary history of  lessThan i greaterThan Citronella lessThan /i greaterThan  being distantly related to wild  lessThan i greaterThan Z. mays lessThan /i greaterThan .</abstract>
<authors>AAKANKSHA WANY, VINOD KUMAR NIGAMAND DEV MANI PANDEY</authors>
<keywords>Annotation, GDH, LTR, Phylogenetic analysis, Retrotransposons, Sequencing</keywords>
<pages>58-80</pages>
</article>
</Journal>
